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Rosario Biancheri Prof. Ciro Botta
Dettaglio job

20260403_175309_b6ba5cd7

Creato: 2026-04-03 17:53:09

Avvio: 2026-04-03 17:53:09 · Fine: 2026-04-03 17:53:21

Runner backend: Wrapper completo

completed
Tempo trascorso
--:--:--
Step attualeCompletato
Progressione4/4 · 100%
File FCS10
Output9

Messaggio: Completato

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Avanzamento pipeline

Stato live degli step
1
Validazione input MM-MRD
done
Rilevati 10 file FCS
2
Preparazione esecuzione MM-MRD
done
Comando pronto
3
Analisi MM-MRD
done
Pipeline MM-MRD terminata con successo
4
Raccolta output MM-MRD
done
Trovati 9 file
Job creato 2026-04-03 17:53:09
File caricati correttamente · analysis mode: mm_mrd · backend: Wrapper completo
Job avviato 2026-04-03 17:53:09
Analysis mode: mm_mrd · modalità real · runner: Wrapper completo
Validazione input MM-MRD 2026-04-03 17:53:09
Preparazione esecuzione MM-MRD 2026-04-03 17:53:09
Costruzione comando MM-MRD
Analisi MM-MRD 2026-04-03 17:53:09
run_mm_mrd_pipeline.py in esecuzione
Raccolta output MM-MRD 2026-04-03 17:53:21
Indicizzazione dei file generati
Completato 2026-04-03 17:53:21
Pipeline terminata con successo

Input

  • Analysis mode: mm_mrd
  • Metadata: inputs/sample_metadata.csv
  • FCS: 10 file
  • Nota: -

Comandi eseguiti

/opt/cbflow/venv/bin/python /opt/cbflow/backend/flowct_py_v2_project/scripts/run_mm_mrd_pipeline.py --input-dir /opt/cbflow/backend/flowct_py_v2_project/web_mpv/job_runs/20260403_175309_b6ba5cd7/inputs --metadata-csv /opt/cbflow/backend/flowct_py_v2_project/web_mpv/job_runs/20260403_175309_b6ba5cd7/inputs/sample_metadata.csv --output-dir /opt/cbflow/backend/flowct_py_v2_project/web_mpv/job_runs/20260403_175309_b6ba5cd7/outputs

MM-MRD summary

Campi chiave del report MM-MRD, inclusa la distinzione tra call standard T2 e rescued T2.

5 case
Case Patient Final clonality Clonality source Standard T2 call Rescued T2 call Rescue subset n MRD burden MRD status Hemodilution anti-CD38 flag sample_type analysis_mode engine_mode panel_id panel_supported anti_cd38_safe events_total events_analyzed event_qc_flag total_pc_count normal_pc_count aberrant_pc_count uncertain_pc_count mrd_burden lod loq research_only_flag warnings
MMMRD_P01 MMMRD_P01 polyclonal_or_non_informative unresolved polyclonal_or_non_informative not_attempted 0 0.00e+00 not_detected adequate no BM mm_mrd real_gating_v1_3 ngf_inspired_2t_8c yes yes 150000 149402 insufficient 4505 4488 0 17 0.0 0.00013386701650580312 0.00033466754126450785 yes Real gating v1.3 active: rule-based plasma-cell gating, sample-adaptive aberrancy scoring, and robust T2 clonality rescue. | Current v1 uses independent T1 and T2 compartment logic; no advanced multi-tube cell-by-cell fusion yet. | Clonality not confidently resolved on T2 with current v1.3 thresholds. | Low-count non-clonal aberrant-like events were suppressed by the v1.1 noise floor.
MMMRD_P02 MMMRD_P02 kappa_restricted standard_t2 kappa_restricted not_needed 0 1.00e-04 trace_below_lod adequate no BM mm_mrd real_gating_v1_3 ngf_inspired_2t_8c yes yes 150000 149402 insufficient 4520 4492 15 13 0.00010040026237935235 0.00013386701650580312 0.00033466754126450785 yes Real gating v1.3 active: rule-based plasma-cell gating, sample-adaptive aberrancy scoring, and robust T2 clonality rescue. | Current v1 uses independent T1 and T2 compartment logic; no advanced multi-tube cell-by-cell fusion yet.
MMMRD_P03 MMMRD_P03 lambda_restricted standard_t2 lambda_restricted not_needed 0 6.89e-04 quantifiable adequate no BM mm_mrd real_gating_v1_3 ngf_inspired_2t_8c yes yes 150000 149401 insufficient 4651 4516 103 32 0.0006894197495331357 0.00013386791253070594 0.0003346697813267649 yes Real gating v1.3 active: rule-based plasma-cell gating, sample-adaptive aberrancy scoring, and robust T2 clonality rescue. | Current v1 uses independent T1 and T2 compartment logic; no advanced multi-tube cell-by-cell fusion yet.
MMMRD_P04 MMMRD_P04 kappa_restricted rescued_t2 polyclonal_or_non_informative kappa_restricted 3 4.69e-05 trace_below_lod suboptimal_hemodiluted no BM mm_mrd real_gating_v1_3 ngf_inspired_2t_8c yes yes 150000 149401 insufficient 2834 2749 7 78 4.685376938574708e-05 0.00013386791253070594 0.0003346697813267649 yes Real gating v1.3 active: rule-based plasma-cell gating, sample-adaptive aberrancy scoring, and robust T2 clonality rescue. | Current v1 uses independent T1 and T2 compartment logic; no advanced multi-tube cell-by-cell fusion yet. | T2 clonality rescue accepted on a high-stringency subset (n=3, dominance=1.00). | Hemodilution-aware stricter aberrancy threshold applied (score >= 4).
MMMRD_P05 MMMRD_P05 kappa_restricted standard_t2 kappa_restricted not_needed 0 3.95e-04 quantifiable adequate possible BM mm_mrd real_gating_v1_3 ngf_inspired_2t_8c yes conditional 150000 149401 insufficient 4557 4485 59 13 0.0003949103419655826 0.00013386791253070594 0.0003346697813267649 yes Possible anti-CD38 interference: use CD138/multiparametric fallback, not CD38 alone | Real gating v1.3 active: rule-based plasma-cell gating, sample-adaptive aberrancy scoring, and robust T2 clonality rescue. | Current v1 uses independent T1 and T2 compartment logic; no advanced multi-tube cell-by-cell fusion yet.

Output scaricabili

I file vengono raggruppati per estensione per facilitare il download.

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Report

1 file

Dati

3 file

Immagini

5 file

Log

Aggiornamento automatico durante queued/running 
$ /opt/cbflow/venv/bin/python /opt/cbflow/backend/flowct_py_v2_project/scripts/run_mm_mrd_pipeline.py --input-dir /opt/cbflow/backend/flowct_py_v2_project/web_mpv/job_runs/20260403_175309_b6ba5cd7/inputs --metadata-csv /opt/cbflow/backend/flowct_py_v2_project/web_mpv/job_runs/20260403_175309_b6ba5cd7/inputs/sample_metadata.csv --output-dir /opt/cbflow/backend/flowct_py_v2_project/web_mpv/job_runs/20260403_175309_b6ba5cd7/outputs
Wrote 5 case summaries to /opt/cbflow/backend/flowct_py_v2_project/web_mpv/job_runs/20260403_175309_b6ba5cd7/outputs